effective genotype [GENO_0000525]

A genotype that describes the total intrinsic and extrinsic variation across a genome at the time of a phenotypic assessment (where ‘intrinsic’ refers to variation in genomic sequence, as mediated by sequence alterations, and ‘extrinsic’ refers to variation in gene expression, as mediated through transient gene-specific interventions such as gene knockdown reagents or overexpression constructs). An effective genotype is meant to summarize all factors related to genes and their expression that influence an observed phenotype - including ‘intrinsic’ alterations in genomic sequence, and gene-specific ‘extrinsic’ alterations in expression transiently introduced at the time of the phenotypic assessment.

Open effective genotype in VFB

VFB Term Json

{
    "term": {
        "core": {
            "iri": "http://purl.obolibrary.org/obo/GENO_0000525",
            "symbol": "",
            "types": [
                "Entity",
                "Class"
            ],
            "short_form": "GENO_0000525",
            "label": "effective genotype"
        },
        "description": [
            "A genotype that describes the total intrinsic and extrinsic variation across a genome at the time of a phenotypic assessment (where 'intrinsic' refers to variation in genomic sequence, as mediated by sequence alterations, and 'extrinsic' refers to variation in gene expression, as mediated through transient gene-specific interventions such as gene knockdown reagents or overexpression constructs)."
        ],
        "comment": [
            "An effective genotype is meant to summarize all factors related to genes and their expression that influence an observed phenotype - including 'intrinsic' alterations in genomic sequence, and gene-specific 'extrinsic' alterations in expression transiently introduced at the time of the phenotypic assessment."
        ]
    },
    "query": "Get JSON for Class",
    "version": "44725ae",
    "parents": [
        {
            "symbol": "",
            "iri": "http://purl.obolibrary.org/obo/GENO_0000536",
            "types": [
                "Entity",
                "Class"
            ],
            "short_form": "GENO_0000536",
            "label": "genotype"
        }
    ],
    "relationships": [
        {
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            "object": {
                "symbol": "",
                "iri": "http://purl.obolibrary.org/obo/GENO_0000524",
                "types": [
                    "Entity",
                    "Class"
                ],
                "short_form": "GENO_0000524",
                "label": "extrinsic genotype"
            }
        },
        {
            "relation": {
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                "label": "has_part",
                "type": "has_part"
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            "object": {
                "symbol": "",
                "iri": "http://purl.obolibrary.org/obo/GENO_0000719",
                "types": [
                    "Entity",
                    "Class"
                ],
                "short_form": "GENO_0000719",
                "label": "intrinsic genotype"
            }
        }
    ],
    "xrefs": [],
    "anatomy_channel_image": [],
    "pub_syn": [],
    "def_pubs": [
        {
            "core": {
                "symbol": "",
                "iri": "http://flybase.org/reports/Unattributed",
                "types": [
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                ],
                "short_form": "Unattributed",
                "label": ""
            },
            "FlyBase": "",
            "PubMed": "",
            "DOI": ""
        }
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}